STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_716Conserved hypothetical protein. (119 aa)    
Predicted Functional Partners:
EDZ46469.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.685
EDZ46568.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.628
EDZ47568.1
Conserved hypothetical protein.
  
     0.627
luxR
Autoinducer-binding transcriptional regulator LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.
  
     0.581
EDZ47775.1
Conserved hypothetical protein.
  
     0.558
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.531
EDZ48626.1
Lipoprotein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.526
EDZ48400.1
Conserved hypothetical protein.
  
     0.524
EDZ47386.1
Conserved hypothetical protein.
  
     0.513
EDZ48409.1
Autoinducer synthesis protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase.
  
     0.507
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.