STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RBY4I_717Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. (321 aa)    
Predicted Functional Partners:
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
  
 0.985
EDZ47843.1
[Q] COG2124 Cytochrome P450.
 0.972
RBY4I_888
[Q] COG2124 Cytochrome P450.
 0.972
EDZ48094.1
[Q] COG2124 Cytochrome P450.
 
 0.965
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
   
 0.955
EDZ47694.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.950
EDZ47708.1
Nitrogen-fixing NifU domain protein; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
 0.939
EDZ48113.1
Oxidoreductase, FAD/FMN-binding family; [O] COG0492 Thioredoxin reductase.
   
 0.932
paaH
phenylacetate-CoA oxygenase, PaaH subunit; [Q] COG3460 Uncharacterized enzyme of phenylacetate metabolism.
  
 
 0.913
nifS
[E] COG0520 Selenocysteine lyase.
  
 0.898
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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