STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_719ABC transporter, membrane spanning protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (298 aa)    
Predicted Functional Partners:
uppS
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
  0.552
RBY4I_931
Transcriptional regulator, ArsR family; [K] COG0640 Predicted transcriptional regulators.
       0.549
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
    
  0.508
flgF
[N] COG4787 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
    
   0.478
atpI
ATP synthase F0, subunit I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
       0.447
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
  0.445
betC
Choline-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ46738.1
Sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ47712.1
[P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ48240.1
Phosphonate monoester hydrolase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.