STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RBY4I_72[S] COG4850 Uncharacterized conserved protein. (440 aa)    
Predicted Functional Partners:
EDZ46656.1
[Q] COG0412 Dienelactone hydrolase and related enzymes.
    
   0.732
EDZ46374.1
Twin-arginine translocation pathway signal; [S] COG2930 Uncharacterized conserved protein.
    
   0.721
RBY4I_14
Endoribonuclease L-PSP family protein; [J] COG0251 Putative translation initiation inhibitor, yjgF family.
       0.516
RBY4I_37
Opine oxidase subunit A; [O] COG0492 Thioredoxin reductase.
       0.509
RBY4I_4
Proline dehydrogenase, alpha subunit; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases.
       0.509
RBY4I_40
Opine oxidase subunit B; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
       0.509
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
   0.479
EDZ48095.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.449
EDZ46352.1
Patatin; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.426
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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