STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_720Transferase hexapeptide repeat; [R] COG0110 Acetyltransferase (isoleucine patch superfamily). (173 aa)    
Predicted Functional Partners:
RBY4I_337
Carbonate dehydratase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
 
 0.940
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
    0.835
EDZ46859.1
Conserved hypothetical protein TIGR00255; [S] COG1561 Uncharacterized stress-induced protein.
       0.797
EDZ45962.1
Alkaline phosphatase synthesis sensor protein PhoR; [T] COG0642 Signal transduction histidine kinase.
 
     0.716
EDZ47466.1
[S] COG5388 Uncharacterized protein conserved in bacteria.
       0.585
cysE
Serine O-acetyltransferase; [M] COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
 
  
 0.530
EDZ46684.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.495
EDZ48756.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
    
 0.495
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
  
 0.444
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.433
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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