STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxCSulfur oxidation molybdopterin C protein; [R] COG2041 Sulfite oxidase and related enzymes. (423 aa)    
Predicted Functional Partners:
soxD_2
[C] COG3474 Cytochrome c2.
 
 0.993
soxA
Diheme Cytochrome c SoxA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
 
 0.958
soxX
Monoheme Cytochrome c SoxX.
 
 
 0.952
soxB
Sulfur oxidation B protein; [F] COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
 
  
 0.942
soxY
Sulfur oxidation Y protein; [S] COG5501 Predicted secreted protein.
 
  
 0.924
RBY4I_539
Cytochrome c, class I; [C] COG3258 Cytochrome c.
 
 
 0.924
soxZ
Sulfur oxidation Z protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
 0.924
soxW
[O] COG2143 Thioredoxin-related protein.
 
     0.807
soxS
Regulatory protein SoxS.
 
     0.799
EDZ47140.1
YeeE/YedE family protein; [R] COG2391 Predicted transporter component.
 
     0.792
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.