Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_729Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators. (147 aa)    
Predicted Functional Partners:
EDZ48268.1
Antibiotic biosynthesis monooxygenase domain protein; [S] COG1359 Uncharacterized conserved protein.
 
    0.948
EDZ47159.1
Peptidoglycan-binding LysM; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.676
EDZ47257.1
Conserved hypothetical protein TIGR00275; [R] COG2081 Predicted flavoproteins.
       0.581
RBY4I_747
Peptidoglycan-binding LysM; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.579
RBY4I_976
[I] COG1835 Predicted acyltransferases.
  
     0.529
soxD_2
[C] COG3474 Cytochrome c2.
   
 
  0.488
EDZ48095.1
Conserved hypothetical protein, putative; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.454
RBY4I_637
Conserved hypothetical protein.
  
    0.400
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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