STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_730Integrase, catalytic region; [L] COG2801 Transposase and inactivated derivatives. (267 aa)    
Predicted Functional Partners:
EDZ47432.1
[L] COG2801 Transposase and inactivated derivatives.
 
    0.735
RBY4I_603
[GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.589
EDZ45806.1
Hypothetical protein.
       0.586
EDZ46284.1
[L] COG3436 Transposase and inactivated derivatives.
       0.480
EDZ47815.1
Hypothetical protein; [L] COG2963 Transposase and inactivated derivatives; transposase and inactivated derivative.
  
    0.424
EDZ47077.1
IS66 Orf2 family protein; [L] COG3436 Transposase and inactivated derivatives.
       0.411
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.