STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_737Conserved hypothetical protein. (91 aa)    
Predicted Functional Partners:
EDZ48385.1
SH3, type 3.
  
     0.716
EDZ46038.1
Conserved hypothetical protein.
  
     0.600
EDZ48452.1
Conserved hypothetical protein.
  
     0.596
EDZ46372.1
Conserved hypothetical protein; [M] COG0773 UDP-N-acetylmuramate-alanine ligase.
  
     0.526
RBY4I_724
Oxidoreductase, short-chain dehydrogenase/reductase family; [R] COG0300 Short-chain dehydrogenases of various substrate specificities.
       0.512
EDZ48558.1
Conserved hypothetical protein.
  
     0.510
EDZ48140.1
Translation elongation factor EF-G; [J] COG4108 Peptide chain release factor RF-3.
  
     0.473
EDZ46599.1
Conserved hypothetical protein.
  
     0.470
RBY4I_346
[S] COG4899 Uncharacterized protein conserved in bacteria.
       0.469
RBY4I_678
Acetyltransferase, gnat family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.467
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.