STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_76Hypothetical protein. (39 aa)    
Predicted Functional Partners:
RBY4I_41
Transcriptional Regulator, AraC family, putative; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
       0.752
RBY4I_25
PimS2 protein; [C] COG0644 Dehydrogenases (flavoproteins).
       0.513
RBY4I_57
Quinohemoprotein amine dehydrogenase, alpha subunit.
       0.513
RBY4I_22
Radical SAM domain protein; [R] COG0641 Arylsulfatase regulator (Fe-S oxidoreductase).
       0.488
qhpC
Quinohemoprotein amine dehydrogenase gamma subunit.
       0.488
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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