STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_764Ammonium transporter family protein; [P] COG0004 Ammonia permease. (457 aa)    
Predicted Functional Partners:
EDZ46268.1
Nitrogen regulatory protein P-II; [J] COG0223 Methionyl-tRNA formyltransferase; Belongs to the P(II) protein family.
 0.988
EDZ48087.1
Nitrogen regulatory protein P-II; [J] COG0223 Methionyl-tRNA formyltransferase; Belongs to the P(II) protein family.
 0.957
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
 
  
 0.774
EDZ47480.1
Conserved hypothetical protein.
       0.752
EDZ46301.1
FwdC/FmdC family protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C.
 
  
 0.682
EDZ47743.1
Glycine cleavage T-protein (aminomethyl transferase); [S] COG3665 Uncharacterized conserved protein; Belongs to the GcvT family.
  
     0.676
RBY4I_471
Glutamate synthase family protein; [F] COG0516 IMP dehydrogenase/GMP reductase; Belongs to the glutamate synthase family.
 
   
 0.627
EDZ47996.1
Class II glutamine amidotransferase, putative; [E] COG0367 Asparagine synthase (glutamine-hydrolyzing).
 
   
 0.596
EDZ47694.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.575
EDZ47852.1
Flavin-containing monooxygenase; [P] COG2072 Predicted flavoprotein involved in K+ transport.
  
     0.550
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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