STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_765Alpha/beta hydrolase fold; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (244 aa)    
Predicted Functional Partners:
EDZ48571.1
Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator.
 
     0.943
EDZ48187.1
O-succinylbenzoic acid-CoA ligase, putative; [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
 
  0.900
EDZ48242.1
Chain A, (R)-Hydratase From A. Caviae Involved In Pha Biosynthesis; [I] COG2030 Acyl dehydratase.
 
 
  0.880
RBY4I_434
Phosphate acetyltransferase; [I] COG2030 Acyl dehydratase.
 
 
  0.876
EDZ47382.1
[I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 
   0.867
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.860
EDZ46675.1
Branched-chain amino acid ABC transporter, ATP-binding protein; [R] COG3845 ABC-type uncharacterized transport systems, ATPase components.
 
  
  0.797
EDZ47805.1
Branched-chain amino acid ABC transporter, ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component.
 
  
  0.781
EDZ48672.1
[E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
  
  0.769
EDZ46242.1
[E] COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
  0.767
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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