STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_772Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; overlaps another CDS with the same product name. (140 aa)    
Predicted Functional Partners:
EDZ46903.1
Thioesterase family protein; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism; overlaps another CDS with the same product name.
  
0.988
EDZ46147.1
Mate efflux family protein; [V] COG0534 Na+-driven multidrug efflux pump.
       0.831
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.595
EDZ46039.1
Transcriptional regulator, MerR family; [K] COG0789 Predicted transcriptional regulators.
  
    0.576
EDZ45002.1
Oxidoreductase, FAD-binding; [C] COG0633 Ferredoxin.
  
 
  0.542
EDZ46647.1
Ferredoxin; [C] COG0633 Ferredoxin.
  
 
  0.538
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
  
 
  0.538
RBY4I_717
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.538
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
  
 0.535
EDZ48199.1
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.473
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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