STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_776Twin-arginine translocation pathway signal; [S] COG3490 Uncharacterized protein conserved in bacteria. (359 aa)    
Predicted Functional Partners:
EDZ47351.1
[C] COG3488 Predicted thiol oxidoreductase.
 
  
 0.979
EDZ48086.1
Conserved hypothetical protein; [J] COG0228 Ribosomal protein S16.
 
  
 0.972
EDZ47867.1
Insulin-cleaving metalloproteinase outer membrane protein; [P] COG3487 Uncharacterized iron-regulated protein.
 
    0.836
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
 
     0.811
RBY4I_522
Conserved hypothetical protein.
 
     0.648
EDZ47887.1
Transcriptional regulator, DeoR family; [KG] COG1349 Transcriptional regulators of sugar metabolism.
 
     0.561
EDZ46968.1
[C] COG0578 Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
       0.498
EDZ45974.1
[S] COG2995 Uncharacterized paraquat-inducible protein A.
  
     0.425
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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