STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_786Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (156 aa)    
Predicted Functional Partners:
arsH
Arsenical resistance protein ArsH; [R] COG0431 Predicted flavoprotein.
       0.777
EDZ46884.1
Conserved hypothetical protein.
  
     0.673
EDZ47398.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.637
RBY4I_639
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.627
EDZ46836.1
Extracellular solute-binding protein, family 3; [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
     0.610
EDZ48450.1
Lipoprotein, putative; [M] COG3064 Membrane protein involved in colicin uptake.
  
     0.605
EDZ47268.1
Conserved hypothetical protein.
  
     0.471
RBY4I_678
Acetyltransferase, gnat family; [KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.451
EDZ47733.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.450
EDZ48135.1
Lipoprotein, putative; [S] COG4782 Uncharacterized protein conserved in bacteria.
  
     0.439
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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