STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_788TRAP transporter, 4TM/12TM fusion protein; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component. (869 aa)    
Predicted Functional Partners:
EDZ46415.1
Trap transporter solute receptor, taxi family; [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component.
    0.971
EDZ48689.1
[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
 
    0.939
EDZ44957.1
Trap transporter solute receptor, taxi family; [R] COG2358 TRAP-type uncharacterized transport system, periplasmic component.
    0.853
EDZ48322.1
[E] COG0160 4-aminobutyrate aminotransferase and related aminotransferases; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.578
RBY4I_28
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.436
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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