RBY4I_79 protein (Rhodobacterales bacterium Y4I)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBY4I_79

[T] COG3920 Signal transduction histidine kinase. (859 aa)

Predicted Functional Partners:

EDZ48440.1

0.921

EDZ46648.1

0.912

EDZ45802.1

0.896

EDZ47872.1

0.888

EDZ48028.1

0.878

EDZ48653.1

0.874

RBY4I_541

0.874

EDZ46337.1

0.857

EDZ48604.1

0.831

RBY4I_17

0.797

Your Current Organism:

Rhodobacterales bacterium Y4I

NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDZ45802.1	EDZ46337.1	RBY4I_1012	RBY4I_1549	[T] COG0642 Signal transduction histidine kinase.	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	0.997
EDZ45802.1	EDZ46648.1	RBY4I_1012	RBY4I_1865	[T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.996
EDZ45802.1	EDZ47872.1	RBY4I_1012	RBY4I_3092	[T] COG0642 Signal transduction histidine kinase.	Cyanobacterial phytochrome A, putative; [T] COG0642 Signal transduction histidine kinase.	0.986
EDZ45802.1	EDZ48028.1	RBY4I_1012	RBY4I_3248	[T] COG0642 Signal transduction histidine kinase.	MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.	0.996
EDZ45802.1	EDZ48440.1	RBY4I_1012	RBY4I_3663	[T] COG0642 Signal transduction histidine kinase.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.997
EDZ45802.1	EDZ48604.1	RBY4I_1012	RBY4I_3827	[T] COG0642 Signal transduction histidine kinase.	[T] COG3920 Signal transduction histidine kinase.	0.998
EDZ45802.1	EDZ48653.1	RBY4I_1012	RBY4I_3876	[T] COG0642 Signal transduction histidine kinase.	Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.	0.996
EDZ45802.1	RBY4I_541	RBY4I_1012	RBY4I_541	[T] COG0642 Signal transduction histidine kinase.	Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.996
EDZ45802.1	RBY4I_79	RBY4I_1012	RBY4I_79	[T] COG0642 Signal transduction histidine kinase.	[T] COG3920 Signal transduction histidine kinase.	0.896
EDZ46337.1	EDZ45802.1	RBY4I_1549	RBY4I_1012	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	[T] COG0642 Signal transduction histidine kinase.	0.997
EDZ46337.1	EDZ46648.1	RBY4I_1549	RBY4I_1865	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	[T] COG0642 Signal transduction histidine kinase.	0.995
EDZ46337.1	EDZ47872.1	RBY4I_1549	RBY4I_3092	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	Cyanobacterial phytochrome A, putative; [T] COG0642 Signal transduction histidine kinase.	0.990
EDZ46337.1	EDZ48028.1	RBY4I_1549	RBY4I_3248	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.	0.994
EDZ46337.1	EDZ48440.1	RBY4I_1549	RBY4I_3663	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.997
EDZ46337.1	EDZ48604.1	RBY4I_1549	RBY4I_3827	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	[T] COG3920 Signal transduction histidine kinase.	0.989
EDZ46337.1	EDZ48653.1	RBY4I_1549	RBY4I_3876	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.	0.995
EDZ46337.1	RBY4I_541	RBY4I_1549	RBY4I_541	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	Sensory box sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.	0.998
EDZ46337.1	RBY4I_79	RBY4I_1549	RBY4I_79	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	[T] COG3920 Signal transduction histidine kinase.	0.857
EDZ46648.1	EDZ45802.1	RBY4I_1865	RBY4I_1012	[T] COG0642 Signal transduction histidine kinase.	[T] COG0642 Signal transduction histidine kinase.	0.996
EDZ46648.1	EDZ46337.1	RBY4I_1865	RBY4I_1549	[T] COG0642 Signal transduction histidine kinase.	HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.	0.995