STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBY4I_796Cyclic nucleotide-binding domain protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components. (984 aa)    
Predicted Functional Partners:
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
  
 0.972
cyaF_1
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
  
 0.945
RBY4I_444
Adenylate cyclase Cya3; [R] COG0457 FOG: TPR repeat.
  
 0.945
EDZ48482.1
Endonuclease; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
 0.928
EDZ48079.1
Adenylate/guanylate cyclase; [C] COG0633 Ferredoxin.
 
 0.923
EDZ47930.1
Protein secretion ABC efflux system, permease and ATP-binding protein; [V] COG1132 ABC-type multidrug transport system, ATPase and permease components.
   
 0.896
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
    
 0.894
EDZ47052.1
Extracellular solute-binding protein, family 5; [E] COG4166 ABC-type oligopeptide transport system, periplasmic component.
  
  
 0.891
EDZ48693.1
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
  0.889
EDZ46348.1
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
  0.888
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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