STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_798Nitrogen regulation protein NtrY; [T] COG0642 Signal transduction histidine kinase. (760 aa)    
Predicted Functional Partners:
EDZ46803.1
Two component, sigma54 specific, transcriptional regulator, Fis family; [T] COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 0.961
EDZ48440.1
Sensor histidine kinase/response regulator; [T] COG0642 Signal transduction histidine kinase.
   
 0.874
EDZ48604.1
[T] COG3920 Signal transduction histidine kinase.
   
 0.872
EDZ48016.1
Two component, sigma54 specific, transcriptional regulator, Fis family; [KE] COG3283 Transcriptional regulator of aromatic amino acids metabolism.
 
 0.856
glnL
Nitrogen regulation protein NR(II); [T] COG0642 Signal transduction histidine kinase.
 
  
0.852
EDZ46337.1
HWE histidine kinase family; [T] COG2202 FOG: PAS/PAC domain.
   
 0.837
EDZ46648.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.832
EDZ48028.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; [T] COG2202 FOG: PAS/PAC domain.
   
 0.823
EDZ45802.1
[T] COG0642 Signal transduction histidine kinase.
   
 0.804
EDZ48653.1
Virulence sensor protein BvgS; [T] COG0642 Signal transduction histidine kinase.
   
 0.804
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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