STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RBY4I_800[S] COG3758 Uncharacterized protein conserved in bacteria. (177 aa)    
Predicted Functional Partners:
hutC
Histidine utilization repressor; [K] COG2188 Transcriptional regulators.
 
  
 0.752
EDZ46983.1
Transcriptional regulator, GntR family; [K] COG2188 Transcriptional regulators.
 
  
 0.708
hutF
Formiminoglutamate deiminase; [FR] COG0402 Cytosine deaminase and related metal-dependent hydrolases.
 
    0.676
hutG
[E] COG3741 N-formylglutamate amidohydrolase.
 
    0.665
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.565
RBY4I_762
Conserved hypothetical protein.
       0.541
hutI
Imidazolonepropionase; [R] COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
  
 0.517
EDZ46850.1
N-formylglutamate amidohydrolase, putative; [E] COG3741 N-formylglutamate amidohydrolase.
 
    0.498
EDZ45847.1
Conserved hypothetical protein; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.481
hutH
[E] COG2986 Histidine ammonia-lyase.
 
  
 0.472
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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