STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RBY4I_805Trap dicarboxylate transporter, dctq subunit; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (221 aa)    
Predicted Functional Partners:
EDZ48008.1
Trap transporter, dctm subunit; [G] COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  
  0.952
EDZ47089.1
Trap dicarboxylate transporter- dctp subunit; [G] COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.897
EDZ48493.1
Conserved hypothetical protein.
     
  0.742
EDZ46059.1
Tripartite ATP-independent periplasmic transporter, DctQ component; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
     
  0.741
RBY4I_47
DctQ; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
     
  0.740
EDZ47640.1
Conserved hypothetical protein; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  
  0.648
EDZ47644.1
Trap transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  
  0.593
RBY4I_50
DctQ; [Q] COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
     
  0.512
EDZ44954.1
Trap dicarboxylate transporter, dctq subunit; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
     
  0.509
dctQ
Trap-t family transporter, periplasmic ligand binding protein, dctq; [G] COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
     
  0.509
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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