STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_86Hypothetical protein; [R] COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif; radical SAM. (288 aa)    
Predicted Functional Partners:
dpoL
Putative DNA polymerase related protein; [L] COG1573 Uracil-DNA glycosylase.
     0.980
EDZ46597.1
[L] COG1793 ATP-dependent DNA ligase.
 
     0.471
EDZ48628.1
mRNA 3'-end processing factor; [J] COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
 
     0.470
RBY4I_6
[R] COG3871 Uncharacterized stress protein (general stress protein 26).
 
     0.453
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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