STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_860Branched-chain amino acid ABC transporter, ATP-binding protein; [G] COG1129 ABC-type sugar transport system, ATPase component. (272 aa)    
Predicted Functional Partners:
EDZ48610.1
ABC transporter, permease protein; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 0.989
EDZ48120.1
Inner-membrane translocator; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 0.988
EDZ44998.1
Inner-membrane translocator; [E] COG4177 ABC-type branched-chain amino acid transport system, permease component; overlaps another CDS with the same product name.
 
  0.981
EDZ47508.1
Branched-chain amino acid ABC transporter, permease protein; [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
  0.971
EDZ46197.1
Inner-membrane translocator; [G] COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.964
RBY4I_701
Branched-chain amino acid ABC transporter, ATP-binding protein; [R] COG3845 ABC-type uncharacterized transport systems, ATPase components.
 
 
0.935
EDZ47619.1
[E] COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
 
  0.913
EDZ48090.1
Inner-membrane translocator; [R] COG4603 ABC-type uncharacterized transport system, permease component; overlaps another CDS with the same product name.
 
 
 0.877
nosF
ABC transporter, ATP-binding protein NosF; [G] COG1129 ABC-type sugar transport system, ATPase component.
   
 
0.869
EDZ48019.1
ABC transporter, permease protein; [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
  0.865
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.