Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_862[E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (406 aa)    
Predicted Functional Partners:
EDZ47526.1
SufBD; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.996
EDZ46508.1
[R] COG2166 SufE protein probably involved in Fe-S center assembly.
 0.994
sufB
FeS assembly protein SufB; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.989
EDZ47258.1
FeS assembly SUF system protein; [R] COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
    0.972
EDZ47708.1
Nitrogen-fixing NifU domain protein; [O] COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.960
nifS
[E] COG0520 Selenocysteine lyase.
  
 
 0.821
EDZ46536.1
Conserved hypothetical protein.
       0.783
EDZ46821.1
Conserved hypothetical protein.
       0.780
EDZ47496.1
Pyridine nucleotide-disulfide oxidoreductase family protein; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
    
  0.686
selD
Selenide, water dikinase; [O] COG0309 Hydrogenase maturation factor.
    
  0.686
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (24%) [HD]