STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBY4I_87Twin-arginine translocation pathway signal; [G] COG1879 ABC-type sugar transport system, periplasmic component. (118 aa)    
Predicted Functional Partners:
RBY4I_126
Twin-arginine translocation pathway signal; [R] COG2041 Sulfite oxidase and related enzymes.
     0.989
RBY4I_102
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  0.955
soxD_2
[C] COG3474 Cytochrome c2.
  
 0.909
cysC
ATP-sulfurylase family; Catalyzes the synthesis of activated sulfate.
     
 0.754
soxX
Monoheme Cytochrome c SoxX.
   
 0.709
RBY4I_539
Cytochrome c, class I; [C] COG3258 Cytochrome c.
 
 
 0.706
msrQ
Ferric reductase domain protein transmembrane component, N-terminal domain; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduct [...]
  
  
 0.648
EDZ45827.1
Nitric oxide reductase subunit C, cytochrome c; [C] COG2857 Cytochrome c1.
   
  0.645
soxA
Diheme Cytochrome c SoxA; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
   
 0.641
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
  
 
 0.633
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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