STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_883Conserved hypothetical protein; [M] COG1664 Integral membrane protein CcmA involved in cell shape determination. (106 aa)    
Predicted Functional Partners:
phnA_2
Alkylphosphonate utilization operon protein PhnA; [P] COG2824 Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism.
       0.554
RBY4I_994
[S] COG3159 Uncharacterized protein conserved in bacteria.
  
     0.539
EDZ47433.1
Conserved hypothetical protein.
       0.485
EDZ46977.1
Surface presentation of antigens protein; [NU] COG1886 Flagellar motor switch/type III secretory pathway protein.
    
   0.481
EDZ47952.1
[S] COG5447 Uncharacterized conserved protein.
  
     0.409
RBY4I_571
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.404
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.