STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_892[T] COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (151 aa)    
Predicted Functional Partners:
EDZ48356.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.808
EDZ48726.1
Permease; [R] COG0730 Predicted permeases.
 
     0.802
EDZ48363.1
2-hydroxychromene-2-carboxylate isomerase family protein; [Q] COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis.
       0.701
EDZ46196.1
MotA/TolQ/ExbB proton channel family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.659
EDZ46628.1
NifU domain protein; [O] COG0694 Thioredoxin-like proteins and domains.
       0.656
RBY4I_263
Peptidase M22, glycoprotease; [O] COG0533 Metal-dependent proteases with possible chaperone activity.
       0.587
RBY4I_874
[R] COG0456 Acetyltransferases.
  
    0.560
tatA
mttA/Hcf106 family, putative; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.534
EDZ48148.1
Hypothetical protein.
       0.532
RBY4I_565
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.503
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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