STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_896Transcriptional regulator, LuxR family; [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain. (251 aa)    
Predicted Functional Partners:
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.816
EDZ46194.1
Endonuclease/exonuclease/phosphatase family protein.
  
     0.679
RBY4I_443
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
    
   0.674
EDZ48409.1
Autoinducer synthesis protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase.
 
 
 0.632
EDZ48244.1
Conserved hypothetical protein; [TQ] COG3916 N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family.
  
 
 0.573
EDZ47573.1
Conserved hypothetical protein; [R] COG3176 Putative hemolysin.
  
     0.548
EDZ48013.1
Conserved hypothetical protein.
  
     0.520
EDZ48756.1
Aminotransferase, DegT/DnrJ/EryC1/StrS family; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.496
EDZ47055.1
Conserved hypothetical protein.
  
     0.485
luxR
Autoinducer-binding transcriptional regulator LuxR; [K] COG2771 DNA-binding HTH domain-containing proteins.
  
 
 0.479
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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