Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_900Transcriptional regulator, LysR family; [GER] COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (289 aa)    
Predicted Functional Partners:
EDZ47013.1
[R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
      0.848
EDZ47223.1
Amidohydrolase 3; [Q] COG1228 Imidazolonepropionase and related amidohydrolases.
       0.634
uppS
Undecaprenyl pyrophosphate synthetase 1; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
  0.552
EDZ46557.1
Conserved hypothetical protein; [V] COG3440 Predicted restriction endonuclease.
       0.535
RBY4I_93
ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component.
    
  0.508
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
     
  0.445
betC
Choline-sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ46738.1
Sulfatase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ47712.1
[P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
EDZ48240.1
Phosphonate monoester hydrolase; [P] COG3119 Arylsulfatase A and related enzymes.
    
  0.412
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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