STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_910Transcriptional regulator, TetR family; [K] COG1309 Transcriptional regulator. (198 aa)    
Predicted Functional Partners:
paaD
Phenylacetic acid degradation protein PaaD; [Q] COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
     0.801
RBY4I_833
PaaX domain protein; [K] COG3327 Phenylacetic acid-responsive transcriptional repressor.
 
     0.761
paaB
Phenylacetate degradation probable enoyl-CoA hydratase paaB; [I] COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
     0.756
paaF
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.731
RBY4I_689
Phenylacetic acid catabolic family protein; [S] COG3396 Uncharacterized conserved protein.
  
     0.690
paaK
Phenylacetic acid degradation oxidoreductase PaaK; [HC] COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
 
 
  0.663
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
 
   
 0.594
EDZ48635.1
Reductive dehalogenase subfamily, putative; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
 0.484
RBY4I_717
Vanillate O-demethylase oxidoreductase; [C] COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
 
  0.448
EDZ47217.1
Monooxygenase family protein; [HC] COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
  
     0.401
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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