STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_93ABC transporter, ATP-binding protein; [P] COG1122 ABC-type cobalt transport system, ATPase component. (898 aa)    
Predicted Functional Partners:
RBY4I_116
Secretion protein HlyD family protein; [V] COG1566 Multidrug resistance efflux pump.
  
 0.964
yejA
Oligopeptide/dipeptide uptake family ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
  
 0.942
RBY4I_542
ABC transporter, periplasmic substrate-binding protein; [E] COG0747 ABC-type dipeptide transport system, periplasmic component.
  
 0.942
EDZ46145.1
Membrane protein; [Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
    
 0.913
EDZ47038.1
ABC transporter, permease protein.
    
  0.912
EDZ48137.1
ABC transporter, ATP-binding protein; [P] COG1118 ABC-type sulfate/molybdate transport systems, ATPase component.
    
  0.910
EDZ45973.1
ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
  
 
 0.909
proV
Glycine betaine/L-proline ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
     
  0.909
EDZ46679.1
Efflux ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
  
 
 0.909
EDZ46917.1
ABC transporter, ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
  
 
 0.909
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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