STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_932TrkA-C; [P] COG0471 Di- and tricarboxylate transporters. (591 aa)    
Predicted Functional Partners:
EDZ47617.1
Transcriptional regulator/arsenate reductase; [K] COG0640 Predicted transcriptional regulators; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.670
cysC
ATP-sulfurylase family; Catalyzes the synthesis of activated sulfate.
 
  
 0.670
RBY4I_99
Calcium-transporting ATPase 1 (Golgi Ca(2+)-ATPase); [P] COG2217 Cation transport ATPase.
  
 
 0.667
EDZ48531.1
[S] COG0217 Uncharacterized conserved protein.
  
    0.648
RBY4I_210
60Kd inner membrane protein; [U] COG0706 Preprotein translocase subunit YidC.
  
  
 0.628
EDZ48660.1
Na+/H+ antiporter family domain protein; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
  
  
 0.625
EDZ47177.1
TrkA-N; [P] COG0569 K+ transport systems, NAD-binding component.
  
  
 0.624
EDZ47453.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
  
  
 0.620
RBY4I_385
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
  
  
 0.620
EDZ46770.1
Potassium efflux system protein; [P] COG0475 Kef-type K+ transport systems, membrane components; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
     
 0.619
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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