STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_97Muconate cycloisomerase 1; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (392 aa)    
Predicted Functional Partners:
RBY4I_134
Chlorocatechol 1,2-dioxygenase; [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.971
RBY4I_140
Transcriptional regulator, LysR family; [K] COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.719
RBY4I_82
Riboflavin kinase; [H] COG0196 FAD synthase.
 
     0.578
EDZ48560.1
[S] COG3367 Uncharacterized conserved protein.
    
  0.547
EDZ46368.1
[E] COG3938 Proline racemase; Belongs to the proline racemase family.
    
 0.523
RBY4I_117
Putative carboxylesterase protein; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
  
  0.519
EDZ46793.1
Chorismate synthase; [S] COG3375 Uncharacterized conserved protein.
     0.515
pcaH
[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit.
 
 
 0.514
RBY4I_110
Phenol hydroxylase component B; [R] COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
       0.500
RBY4I_113
Phenol hydroxylase, oxygenase component; [Q] COG2368 Aromatic ring hydroxylase.
 
     0.464
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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