STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_976[I] COG1835 Predicted acyltransferases. (370 aa)    
Predicted Functional Partners:
EDZ46015.1
Acyltransferase family protein; [I] COG2937 Glycerol-3-phosphate O-acyltransferase.
       0.678
RBY4I_83
Glycosyl transferase, group 2 family protein; [M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
   
 0.664
EDZ46696.1
Succinoglycan biosynthesis transport protein ExoP, putative; [D] COG2894 Septum formation inhibitor-activating ATPase.
 
   
 0.636
EDZ46996.1
[S] COG2898 Uncharacterized conserved protein.
 
   
 0.620
RBY4I_729
Transcriptional regulator, MarR family; [K] COG1846 Transcriptional regulators.
  
     0.529
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
 
   
 0.527
EDZ46123.1
[I] COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding).
       0.486
ccrA
crotonyl-CoA reductase; [R] COG1064 Zn-dependent alcohol dehydrogenases.
     
 0.465
EDZ46066.1
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.460
EDZ47359.1
Luciferase-like monooxygenase family; [Q] COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.450
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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