Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_981Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (476 aa)    
Predicted Functional Partners:
EDZ47029.1
[H] COG1539 Dihydroneopterin aldolase.
     
 0.620
EDZ47744.1
[P] COG3626 Uncharacterized enzyme of phosphonate metabolism.
   
    0.567
queD
Queuosine biosynthesis protein QueD; [H] COG0720 6-pyruvoyl-tetrahydropterin synthase.
     
  0.563
EDZ46122.1
[C] COG0584 Glycerophosphoryl diester phosphodiesterase.
  
 
 0.534
EDZ44974.1
[C] COG0584 Glycerophosphoryl diester phosphodiesterase.
  
 
 0.534
folK
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; [H] COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase.
   
 
  0.516
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.512
EDZ44909.1
Helix-turn-helix domain protein; [K] COG1396 Predicted transcriptional regulators.
  
     0.512
ribE
[H] COG0307 Riboflavin synthase alpha chain.
     
  0.508
EDZ46004.1
Conserved hypothetical protein.
     
  0.507
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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