STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_982[G] COG2513 PEP phosphonomutase and related enzymes. (247 aa)    
Predicted Functional Partners:
gltA
[C] COG0372 Citrate synthase; Belongs to the citrate synthase family.
  
 0.970
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
   
 0.956
EDZ44949.1
MmgE/PrpD family protein; [R] COG2079 Uncharacterized protein involved in propionate catabolism.
  
  
 0.910
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 0.888
EDZ47754.1
methylated-DNA--protein-cysteine methyltransferase; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.869
EDZ44986.1
Aconitase family (aconitate hydratase); [E] COG0065 3-isopropylmalate dehydratase large subunit.
   
 
 0.810
EDZ47453.1
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
 0.792
RBY4I_385
Phosphate acetyl/butyryl transferase subfamily, putative; [C] COG0281 Malic enzyme.
    
 0.792
paaN
Phenylacetic acid degradation protein paaN; [C] COG1012 NAD-dependent aldehyde dehydrogenases.
  
 
 0.784
fdhB
Formate dehydrogenase, beta subunit; [C] COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC.
     
  0.761
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.