STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RBY4I_984[E] COG1748 Saccharopine dehydrogenase and related proteins. (380 aa)    
Predicted Functional Partners:
sdh
Saccharopine dehydrogenase; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
     0.942
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
  0.940
EDZ46183.1
[S] COG4095 Uncharacterized conserved protein.
       0.746
gst_3
[O] COG0625 Glutathione S-transferase.
       0.746
RBY4I_895
Phosphoglycerate mutase family protein; [G] COG0406 Fructose-2,6-bisphosphatase.
 
     0.743
RBY4I_64
ABC transporter, inner membrane subunit; [V] COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
 
  0.659
EDZ46168.1
OmpA/MotB; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.612
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
  0.612
EDZ46529.1
Putative peptidoglycan binding domain protein.
    
  0.612
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
 
 
  0.551
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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