STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_994[S] COG3159 Uncharacterized protein conserved in bacteria. (235 aa)    
Predicted Functional Partners:
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
  
    0.848
xerC
Tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.790
EDZ47141.1
Conserved hypothetical protein.
  
     0.751
mreC
[M] COG1792 Cell shape-determining protein.
 
     0.734
EDZ46077.1
[S] COG1426 Uncharacterized protein conserved in bacteria.
 
     0.713
dacB
[M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4).
  
     0.713
EDZ48671.1
rpsU-divergently transcribed protein; [S] COG5590 Uncharacterized conserved protein.
  
     0.700
EDZ47436.1
Conserved hypothetical protein.
  
     0.691
EDZ48328.1
Penicillin amidase superfamily; [R] COG2366 Protein related to penicillin acylase.
  
     0.679
EDZ48156.1
Conserved hypothetical protein.
  
     0.676
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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