STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_995Aminotransferase class-III; [E] COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (464 aa)    
Predicted Functional Partners:
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
  
 0.865
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
 
 
 0.775
RBY4I_528
Gamma-glutamylputrescine oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
  0.765
EDZ48643.1
Hypothetical protein; [C] COG2218 Formylmethanofuran dehydrogenase subunit C; Conserved region in glutamate synthase family.
     
 0.757
EDZ48662.1
KR domain family; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase.
    
 0.743
EDZ47131.1
FAD dependent oxidoreductase; [E] COG0665 Glycine/D-amino acid oxidases (deaminating).
 
  
  0.723
potF
Putrescine ABC transporter, periplasmic putrescine-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
     0.696
EDZ47018.1
Transcriptional regulator, GntR family; [K] COG1802 Transcriptional regulators.
 
     0.676
RBY4I_965
[E] COG0174 Glutamine synthetase.
 
  
  0.654
EDZ48442.1
Decarboxylase, group II; [E] COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
 
   
  0.591
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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