STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBY4I_998Conserved hypothetical protein. (102 aa)    
Predicted Functional Partners:
RBY4I_334
Hypothetical protein; [K] COG2378 Predicted transcriptional regulator; helix-turn-helix, type 11.
       0.579
EDZ46354.1
Aminotransferase, class III family; [E] COG4992 Ornithine/acetylornithine aminotransferase.
     
 0.514
EDZ46743.1
Transcriptional regulatory protein; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
  
 0.491
EDZ47516.1
Undecaprenyl-phosphate galactose phosphotransferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.479
EDZ48350.1
UDP-galactose-lipid carrier transferase; [M] COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.479
tatA
mttA/Hcf106 family, putative; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.474
tatC
Twin arginine-targeting protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.474
tatB
Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
       0.474
EDZ46696.1
Succinoglycan biosynthesis transport protein ExoP, putative; [D] COG2894 Septum formation inhibitor-activating ATPase.
  
 
 0.473
galE
UDP-glucose 4-epimerase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.466
Your Current Organism:
Rhodobacterales bacterium Y4I
NCBI taxonomy Id: 439496
Other names: R. bacterium Y4I
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