Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0001Hypothetical protein. (306 aa)    
Predicted Functional Partners:
cce_4134
Hypothetical protein; Contains a Lipase, class 2 domain.
 
  
 0.957
dgkA
Diacylglycerol kinase.
     
 0.903
cce_0837
Conserved hypothetical protein.
  
  
 
0.902
cce_3237
Glycosyl transferase, family 2.
   
 
  0.901
cce_4887
Hypothetical protein.
  
  
 
0.900
cce_0002
Alcohol dehydrogenase.
   
   0.788
cce_0003
Hypothetical protein.
       0.539
cce_1963
Putative Rieske [2Fe-2S] domain-containing cell death suppressor protein.
  
     0.519
cce_3078
Polyketide synthase.
  
 
 0.519
cce_3345
Conserved hypothetical protein.
  
     0.478
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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