Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0005Conserved hypothetical protein. (208 aa)    
Predicted Functional Partners:
czcA
Cation efflux system membrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.926
cce_0016
Two-component sensor histidine kinase.
 
     0.784
cce_0891
Unknown; Contains an outer membrane efflux protein domain.
  
 
 0.711
cce_1103
Unknown.
  
     0.701
cce_1537
Unknown; Belongs to the orange carotenoid-binding protein family.
  
     0.659
cce_1257
Unknown.
  
     0.640
cce_0006
Hypothetical protein; Contains a glycoside hydrolase, family 24 domain.
 
     0.620
cce_0012
Two-component response regulator.
 
     0.604
cce_1649
Unknown; Contains a nuclear transport factor 2 domain; Belongs to the orange carotenoid-binding protein family.
  
     0.568
cce_4169
Unknown.
  
     0.549
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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