Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0006Hypothetical protein; Contains a glycoside hydrolase, family 24 domain. (234 aa)    
Predicted Functional Partners:
cce_0417
Unknown.
  
     0.733
cce_4184
Hypothetical protein; Contains DUF1232.
  
     0.720
cce_3734
Unknown.
  
     0.674
cce_0098
Conserved hypothetical protein.
  
     0.669
cce_1795
Conserved hypothetical protein.
  
     0.654
cce_0270
Unknown.
  
     0.651
cce_3605
Putative nodulation efficiency protein, NfeD.
  
     0.645
cce_5042
Hypothetical protein; Contains a CHASE2 extracellular sensory domain.
  
     0.640
cce_3950
Hypothetical protein; Contains DUF1232.
  
     0.635
cce_4519
Hypothetical protein; Contains a beta-lactamase-like domain.
  
     0.627
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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