Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0009Unknown. (66 aa)    
Predicted Functional Partners:
cce_0008
Hypothetical protein.
  
   0.881
vapC2
Putative virulence associated protein C; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   0.577
xisI1
Probable fdxN element excision controlling factor protein.
       0.518
cce_4226
Unknown; Contains a PilT protein, N-terminal domain.
  
     0.515
cyl0017
Contains a PilT protein, N-terminal domain.
  
   0.501
cce_1228
Hypothetical protein.
  
   0.501
cce_2135
Hypothetical protein.
  
   0.501
vapC
StbB-like plasmid stabilization protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
   0.501
cce_4466
Hypothetical protein.
  
   0.501
xisH1
Probable fdxN element excision controlling factor protein.
       0.434
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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