Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0015Unknown; Contains a Lambda repressor-like, DNA-binding domain. (361 aa)    
Predicted Functional Partners:
cce_0699
Hypothetical protein.
  
   
 0.649
cce_0016
Two-component sensor histidine kinase.
 
   
 0.604
cce_1103
Unknown.
  
     0.476
cce_3033
Hypothetical protein; Contains a serralysin-like metalloprotease, C-terminal domain.
  
    0.476
cce_0014
Putative site-specific DNA-methyltransferase.
 
     0.439
cce_3078
Polyketide synthase.
      
 0.424
cce_4213
Hypothetical protein.
  
     0.401
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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