Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0022Unknown; Contains a TPR-like helical domain. (141 aa)    
Predicted Functional Partners:
cce_0207
Conserved hypothetical protein.
  
     0.752
cce_2199
Conserved hypothetical protein; Belongs to the UPF0367 family.
  
     0.746
cce_0453
Putative transcriptional regulator AbrB.
  
     0.734
cce_3692
Hypothetical protein; Contains a GCN5-related N-acetyltransferase domain.
  
     0.731
cce_4619
Unknown.
  
     0.702
cce_2796
Conserved hypothetical protein.
  
     0.660
cce_3329
Conserved hypothetical protein.
  
     0.643
cce_4617
Unknown.
  
     0.629
cce_0021
Unknown; Contains HesB/YadR/YfhF domains; Belongs to the HesB/IscA family.
       0.624
cce_3362
Unknown; Contains a eukaryotic transcription factor, DNA-binding domain.
  
     0.616
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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