STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmhAPhosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate; Belongs to the SIS family. GmhA subfamily. (196 aa)    
Predicted Functional Partners:
cce_0042
Histidinol-phosphate phosphatase, HAD-superfamily hydrolase subfamily IIIA.
  
 0.999
lmbP
Putative GHMP kinase, LmbP protein.
 
 0.994
cce_1019
Glycosyl transferase, group 1.
 
  
 0.894
cce_0965
Putative nucleotidyl transferase.
  
 0.805
cce_0924
Unknown; Contains a glycosyl transferase, family 9 domain.
 
   
 0.774
cce_0044
Putative GDP-L-fucose synthase.
  
  
 0.764
rfbW
Mannosyl transferase.
  
  
 0.746
mtfB
Mannosyl transferase B.
  
  
 0.746
cce_0041
Hypothetical protein.
  
  
 0.746
dnaA
Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
    
 
 0.679
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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