Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cce_0053Unknown; Contains a senescence marker protein-30 (SMP-30) domain. (317 aa)    
Predicted Functional Partners:
cce_1466
Probable AMP-dependent synthetase and ligase.
  
    0.789
cce_0052
DUF1499-containing protein.
       0.613
cce_3047
Putative MbtH-like protein.
  
    0.579
cce_3741
Hypothetical protein.
  
     0.486
lgt
Polipoprotein diacylglyceryltransferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.441
menF
Isochorismate synthase.
  
    0.434
cce_0055
Putative metal-dependent phosphohydrolase.
       0.423
cce_2210
Unknown.
  
     0.414
cce_2567
Hypothetical protein; Contains an Armadillo-like helical domain.
  
     0.409
cce_4796
Putative peptidase; Belongs to the peptidase S8 family.
  
     0.408
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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