STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cce_0057Hypothetical protein. (446 aa)    
Predicted Functional Partners:
cce_0056
Hypothetical protein; Contains an S-layer homology (SLH) domain.
       0.705
cce_0055
Putative metal-dependent phosphohydrolase.
       0.652
cce_1148
Unknown.
  
     0.648
lgt
Polipoprotein diacylglyceryltransferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.622
cce_1925
Contains a GTP-binding protein, HSR1-related domain.
  
     0.578
cce_2852
Unknown; Contains a TPR-like helical domain.
  
     0.554
cce_4799
rfrA family pentapeptide repeat.
  
     0.549
cce_1782
Putative transposase.
  
     0.537
cce_0058
Unknown.
       0.516
cce_1708
Unknown; Contains a secretion protein HlyD domain; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.475
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.