Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glcDGlycolate oxidase subunit. (485 aa)    
Predicted Functional Partners:
glcF
Glycolate oxidase subunit (Fe-S) protein.
 
 0.996
glcE
Glycolate oxidase subunit.
  
  
 
0.929
cce_0591
KHG-KDPG bifunctional aldolase.
   
 
 0.909
cce_0753
Probable HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.904
cce_1821
Putative HAD-superfamily hydrolase, subfamily IA.
    
 0.904
cce_2871
Alanine--glyoxylate/serine-pyruvate aminotransferase, aminotransferase class V.
  
 
  0.904
ndhD4
NADH dehydrogenase subunit 4.
      
 0.781
ndhL
NADH dehydrogenase subunit L; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
      
 0.751
ndhF4
NADH dehydrogenase subunit 5.
      
 0.692
hoxF
NADH dehydrogenase I chain F.
   
 0.633
Your Current Organism:
Crocosphaera subtropica
NCBI taxonomy Id: 43989
Other names: C. subtropica ATCC 51142, Crocosphaera subtropica ATCC 51142, Cyanothece sp. ATCC 51142, Cyanothece sp. BH68, Cyanothece sp. BH68K
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